HL_9J1M_002
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UGUCAACCGA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9J1M_002 not in the Motif Atlas
- Homologous match to HL_4WF9_002
- Geometric discrepancy: 0.4315
- The information below is about HL_4WF9_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9J1M|1|A|U|87
9J1M|1|A|G|88
9J1M|1|A|U|89
9J1M|1|A|C|90
9J1M|1|A|A|91
9J1M|1|A|A|92
9J1M|1|A|C|93
9J1M|1|A|C|94
9J1M|1|A|G|95
9J1M|1|A|A|96
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- Large ribosomal subunit protein uL23
- Chain U
- Large ribosomal subunit protein uL24
- Chain Y
- Large ribosomal subunit protein uL29
Coloring options: