HL_9J1M_004

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_004 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.1975

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9J1M|1|A|A|137
9J1M|1|A|G|138
9J1M|1|A|U|139
9J1M|1|A|G|140
9J1M|1|A|A|141
9J1M|1|A|U|142
9J1M|1|A|G|143
9J1M|1|A|U|144

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23