HL_9J1M_009

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGGGUAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_009 not in the Motif Atlas

Geometric match to HL_6R47_001

Geometric discrepancy: 0.2319

The information below is about HL_6R47_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9J1M|1|A|C|292
9J1M|1|A|G|293
9J1M|1|A|G|294
9J1M|1|A|G|295
9J1M|1|A|U|296
9J1M|1|A|A|297
9J1M|1|A|G|298
9J1M|1|A|G|299

Current chains

Chain A

23S rRNA

Nearby chains