HL_9J1M_015

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

9J1M|1|A|G|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_015 not in the Motif Atlas

Geometric match to HL_5J7L_146

Geometric discrepancy: 0.1089

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9J1M|1|A|G|499
9J1M|1|A|G|500
9J1M|1|A|A|501
9J1M|1|A|C|502
9J1M|1|A|C|503
9J1M|1|A|A|504
9J1M|1|A|C|505
9J1M|1|A|C|506

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15