HL_9J1M_027

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

9J1M|1|A|U|1086, 9J1M|1|A|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_027 not in the Motif Atlas

Geometric match to HL_9DFE_025

Geometric discrepancy: 0.1078

The information below is about HL_9DFE_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9J1M|1|A|G|1083
9J1M|1|A|G|1084
9J1M|1|A|A|1085
9J1M|1|A|U|1086
9J1M|1|A|A|1087
9J1M|1|A|A|1088
9J1M|1|A|G|1089
9J1M|1|A|C|1090

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

30S ribosomal protein THX

Chain M

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL27