HL_9J1M_028

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_028 not in the Motif Atlas

Geometric match to HL_4WF9_028

Geometric discrepancy: 0.0995

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9J1M|1|A|G|1107
9J1M|1|A|A|1108
9J1M|1|A|A|1109
9J1M|1|A|A|1110
9J1M|1|A|C|1111
9J1M|1|A|A|1112
9J1M|1|A|G|1113
9J1M|1|A|C|1114

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

30S ribosomal protein THX

Chain Q

Large ribosomal subunit protein bL20

Chain Z

Large ribosomal subunit protein uL30