HL_9J1M_033

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_033 not in the Motif Atlas

Geometric match to HL_9DFE_031

Geometric discrepancy: 0.1042

The information below is about HL_9DFE_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9J1M|1|A|G|1412
9J1M|1|A|U|1413
9J1M|1|A|G|1414
9J1M|1|A|A|1415
9J1M|1|A|G|1416
9J1M|1|A|A|1417
9J1M|1|A|A|1418
9J1M|1|A|C|1419
9J1M|1|A|C|1420

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain N

Large ribosomal subunit protein bL17

Chain S

Large ribosomal subunit protein uL22