HL_9J1M_037

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UCAGUGGUAACA

Length

12 nucleotides

Bulged bases

9J1M|1|A|A|1690, 9J1M|1|A|G|1691, 9J1M|1|A|U|1692, 9J1M|1|A|C|1698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_037 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.593

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9J1M|1|A|U|1688
9J1M|1|A|C|1689
9J1M|1|A|A|1690
9J1M|1|A|G|1691
9J1M|1|A|U|1692
9J1M|1|A|G|1693
9J1M|1|A|G|1694
9J1M|1|A|U|1695
9J1M|1|A|A|1696
9J1M|1|A|A|1697
9J1M|1|A|C|1698
9J1M|1|A|A|1699

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17