HL_9J1M_038

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

9J1M|1|A|C|1730, 9J1M|1|A|U|1734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_038 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.0652

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9J1M|1|A|G|1729
9J1M|1|A|C|1730
9J1M|1|A|A|1731
9J1M|1|A|A|1732
9J1M|1|A|A|1733
9J1M|1|A|U|1734
9J1M|1|A|C|1735

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2