HL_9J1M_041

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9J1M|1|A|A|1849, 9J1M|1|A|A|1851, 9J1M|1|A|A|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_041 not in the Motif Atlas

Geometric match to HL_7A0S_040

Geometric discrepancy: 0.0725

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9J1M|1|A|C|1847
9J1M|1|A|G|1848
9J1M|1|A|A|1849
9J1M|1|A|C|1850
9J1M|1|A|A|1851
9J1M|1|A|C|1852
9J1M|1|A|A|1853
9J1M|1|A|G|1854

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain S

Large ribosomal subunit protein uL22