HL_9J1M_043

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9J1M|1|A|U|1928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_043 not in the Motif Atlas

Geometric match to HL_4JF2_003

Geometric discrepancy: 0.0691

The information below is about HL_4JF2_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9J1M|1|A|C|1926
9J1M|1|A|U|1927
9J1M|1|A|U|1928
9J1M|1|A|C|1929
9J1M|1|A|G|1930
9J1M|1|A|G|1931

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Mitochondrial domain of uncharacterised function (DUF1713)