HL_9J1M_053

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9J1M|1|A|G|2488

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_053 not in the Motif Atlas

Geometric match to HL_9DFE_051

Geometric discrepancy: 0.0754

The information below is about HL_9DFE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9J1M|1|A|C|2486
9J1M|1|A|U|2487
9J1M|1|A|G|2488
9J1M|1|A|OMG|2489
9J1M|1|A|G|2490
9J1M|1|A|G|2491
9J1M|1|A|C|2492
9J1M|1|A|G|2493
9J1M|1|A|G|2494

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL27

Chain u

tRNA