HL_9J1M_059

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGAGUGGAAG

Length

10 nucleotides

Bulged bases

9J1M|1|A|A|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_059 not in the Motif Atlas

Geometric match to HL_9DFE_057

Geometric discrepancy: 0.1095

The information below is about HL_9DFE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9J1M|1|A|C|2642
9J1M|1|A|G|2643
9J1M|1|A|A|2644
9J1M|1|A|G|2645
9J1M|1|A|U|2646
9J1M|1|A|G|2647
9J1M|1|A|G|2648
9J1M|1|A|A|2649
9J1M|1|A|A|2650
9J1M|1|A|G|2651

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15