HL_9J1M_060

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_060 not in the Motif Atlas

Geometric match to HL_9DFE_058

Geometric discrepancy: 0.1382

The information below is about HL_9DFE_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9J1M|1|A|A|2709
9J1M|1|A|G|2710
9J1M|1|A|U|2711
9J1M|1|A|C|2712
9J1M|1|A|C|2713
9J1M|1|A|A|2714
9J1M|1|A|U|2715
9J1M|1|A|A|2716
9J1M|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain M

Large ribosomal subunit protein uL16