HL_9J1M_068

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GCAGAACAC

Length

9 nucleotides

Bulged bases

9J1M|1|A|C|3055

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_068 not in the Motif Atlas

Geometric match to HL_9DFE_065

Geometric discrepancy: 0.0879

The information below is about HL_9DFE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9J1M|1|A|G|3054
9J1M|1|A|C|3055
9J1M|1|A|A|3056
9J1M|1|A|G|3057
9J1M|1|A|A|3058
9J1M|1|A|A|3059
9J1M|1|A|C|3060
9J1M|1|A|A|3061
9J1M|1|A|C|3062

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein bL17