HL_9J1M_071

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAUUCCG

Length

7 nucleotides

Bulged bases

9J1M|1|B|U|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_071 not in the Motif Atlas

Geometric match to HL_5J7L_203

Geometric discrepancy: 0.0933

The information below is about HL_5J7L_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9J1M|1|B|C|37
9J1M|1|B|A|38
9J1M|1|B|U|39
9J1M|1|B|U|40
9J1M|1|B|C|41
9J1M|1|B|C|42
9J1M|1|B|G|43

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

Large ribosomal subunit protein uL5

Chain O

Large ribosomal subunit protein uL18