HL_9J1M_100
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9J1M_100 not in the Motif Atlas
- Geometric match to HL_4LFB_029
- Geometric discrepancy: 0.1535
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9J1M|1|a|C|1306
9J1M|1|a|U|1307
9J1M|1|a|G|1308
9J1M|1|a|C|1309
9J1M|1|a|A|1310
9J1M|1|a|A|1311
9J1M|1|a|C|1312
9J1M|1|a|U|1313
9J1M|1|a|C|1314
9J1M|1|a|G|1315
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14B
- Chain s
- Small ribosomal subunit protein uS19
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