HL_9J3T_019

3D structure

PDB id

9J3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA octamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGCGC

Length

7 nucleotides

Bulged bases

9J3T|1|B|G|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J3T_019 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.3907

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9J3T|1|B|G|485
9J3T|1|B|U|486
9J3T|1|B|A|487
9J3T|1|B|G|488
9J3T|1|B|C|489
9J3T|1|B|G|490
9J3T|1|B|C|491

Current chains

Chain B

RNA (580-MER)

Nearby chains

Chain F

ROOL RNA