HL_9J3T_042

3D structure

PDB id

9J3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA octamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J3T_042 not in the Motif Atlas

Geometric match to HL_8P9A_147

Geometric discrepancy: 0.3589

The information below is about HL_8P9A_147

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9J3T|1|E|G|92
9J3T|1|E|G|93
9J3T|1|E|A|94
9J3T|1|E|U|95
9J3T|1|E|A|96
9J3T|1|E|C|97

Current chains

Chain E

RNA (580-MER)

Nearby chains