HL_9J3T_047

3D structure

PDB id

9J3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA octamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

9J3T|1|E|A|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J3T_047 not in the Motif Atlas

Geometric match to HL_6CB3_006

Geometric discrepancy: 0.2565

The information below is about HL_6CB3_006

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9J3T|1|E|A|316
9J3T|1|E|G|317
9J3T|1|E|A|318
9J3T|1|E|A|319
9J3T|1|E|A|320
9J3T|1|E|U|321

Current chains

Chain E

RNA (580-MER)

Nearby chains

Chain F

ROOL RNA