HL_9J4N_002

3D structure

PDB id

9J4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of E. coli Leucine tRNA with UAG anticodon

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J4N_002 not in the Motif Atlas

Geometric match to HL_6UFM_003

Geometric discrepancy: 0.1467

The information below is about HL_6UFM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9J4N|1|A|G|53
9J4N|1|A|U|54
9J4N|1|A|U|55
9J4N|1|A|C|56
9J4N|1|A|A|57
9J4N|1|A|A|58
9J4N|1|A|G|59
9J4N|1|A|U|60
9J4N|1|A|C|61

Current chains

Chain A

Leucine tRNA_UAG (85-MER)

Nearby chains