HL_9JL2_001

3D structure

PDB id

9JL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Classical conformation for the spCas9 with gRNA and target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JL2_001 not in the Motif Atlas

Geometric match to HL_5XTM_002

Geometric discrepancy: 0.2412

The information below is about HL_5XTM_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9JL2|1|B|A|32
9JL2|1|B|G|33
9JL2|1|B|A|34
9JL2|1|B|A|35
9JL2|1|B|A|36
9JL2|1|B|U|37

Current chains

Chain B

gRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1