HL_9JNS_015
3D structure
- PDB id
- 9JNS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S precursor - Erm complex (C-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9JNS|1|A|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9JNS_015 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.5039
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9JNS|1|A|U|566
9JNS|1|A|U|567
9JNS|1|A|U|568
9JNS|1|A|U|569
9JNS|1|A|G|570
9JNS|1|A|U|571
9JNS|1|A|A|572
9JNS|1|A|U|573
9JNS|1|A|A|574
9JNS|1|A|A|575
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain R
- 50S ribosomal protein L21
Coloring options: