HL_9JNS_029

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9JNS|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JNS_029 not in the Motif Atlas

Geometric match to HL_5LM7_001

Geometric discrepancy: 0.2456

The information below is about HL_5LM7_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9JNS|1|A|A|1630
9JNS|1|A|G|1631
9JNS|1|A|A|1632
9JNS|1|A|G|1633
9JNS|1|A|A|1634
9JNS|1|A|A|1635
9JNS|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains