HL_9JPM_002

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPM_002 not in the Motif Atlas

Homologous match to HL_6CZR_074

Geometric discrepancy: 0.3746

The information below is about HL_6CZR_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9JPM|1|A|G|158
9JPM|1|A|G|159
9JPM|1|A|A|160
9JPM|1|A|A|161
9JPM|1|A|A|162
9JPM|1|A|C|163

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20