HL_9JPM_035

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

9JPM|1|a|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPM_035 not in the Motif Atlas

Geometric match to HL_8B0X_033

Geometric discrepancy: 0.0936

The information below is about HL_8B0X_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.5

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9JPM|1|a|U|59
9JPM|1|a|G|60
9JPM|1|a|C|61
9JPM|1|a|U|62
9JPM|1|a|A|63
9JPM|1|a|A|64
9JPM|1|a|U|65
9JPM|1|a|C|66
9JPM|1|a|U|67
9JPM|1|a|G|68

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23

Chain x

50S ribosomal protein L29