HL_9JPM_046

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9JPM|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPM_046 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3271

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9JPM|1|a|A|382
9JPM|1|a|C|383
9JPM|1|a|A|384
9JPM|1|a|C|385
9JPM|1|a|G|386
9JPM|1|a|U|387
9JPM|1|a|G|388
9JPM|1|a|G|389
9JPM|1|a|U|390
9JPM|1|a|A|391
9JPM|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28