HL_9JPM_056
3D structure
- PDB id
- 9JPM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 9JPM|1|a|5MU|747, 9JPM|1|a|A|751, 9JPM|1|a|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9JPM_056 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1051
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
9JPM|1|a|U|744
9JPM|1|a|1MG|745
9JPM|1|a|PSU|746
9JPM|1|a|5MU|747
9JPM|1|a|G|748
9JPM|1|a|A|749
9JPM|1|a|A|750
9JPM|1|a|A|751
9JPM|1|a|A|752
9JPM|1|a|A|753
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain d
- 50S ribosomal protein L3
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
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