HL_9JPM_098

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9JPM|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPM_098 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.2196

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9JPM|1|a|G|2819
9JPM|1|a|A|2820
9JPM|1|a|A|2821
9JPM|1|a|G|2822
9JPM|1|a|A|2823
9JPM|1|a|C|2824
9JPM|1|a|G|2825
9JPM|1|a|A|2826
9JPM|1|a|C|2827

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17