HL_9JPO_003

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPO_003 not in the Motif Atlas

Geometric match to HL_9H3G_023

Geometric discrepancy: 0.1025

The information below is about HL_9H3G_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9JPO|1|A|C|186
9JPO|1|A|G|187
9JPO|1|A|C|188
9JPO|1|A|A|189
9JPO|1|A|A|190
9JPO|1|A|G|191

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20