HL_9JPO_010

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9JPO|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPO_010 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.3012

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9JPO|1|A|G|462
9JPO|1|A|U|463
9JPO|1|A|U|464
9JPO|1|A|A|465
9JPO|1|A|A|466
9JPO|1|A|U|467
9JPO|1|A|A|468
9JPO|1|A|C|469
9JPO|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains