HL_9JPO_040

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPO_040 not in the Motif Atlas

Geometric match to HL_8B0X_039

Geometric discrepancy: 0.0643

The information below is about HL_8B0X_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63151.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

2

Unit IDs

9JPO|1|a|C|225
9JPO|1|a|A|226
9JPO|1|a|A|227
9JPO|1|a|C|228
9JPO|1|a|C|229
9JPO|1|a|G|230

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15