HL_9JPO_045

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9JPO|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPO_045 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3207

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9JPO|1|a|A|382
9JPO|1|a|C|383
9JPO|1|a|A|384
9JPO|1|a|C|385
9JPO|1|a|G|386
9JPO|1|a|U|387
9JPO|1|a|G|388
9JPO|1|a|G|389
9JPO|1|a|U|390
9JPO|1|a|A|391
9JPO|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28