HL_9JPO_073

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUCG

Length

4 nucleotides

Bulged bases

9JPO|1|a|U|1729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPO_073 not in the Motif Atlas

Geometric match to HL_8VM8_002

Geometric discrepancy: 0.1324

The information below is about HL_8VM8_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

9JPO|1|a|C|1728
9JPO|1|a|U|1729
9JPO|1|a|C|1730
9JPO|1|a|G|1731

Current chains

Chain a

23S rRNA

Nearby chains