HL_9JPO_076

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

9JPO|1|a|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPO_076 not in the Motif Atlas

Homologous match to HL_7A0S_046

Geometric discrepancy: 0.5721

The information below is about HL_7A0S_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9JPO|1|a|C|1806
9JPO|1|a|G|1807
9JPO|1|a|A|1808
9JPO|1|a|A|1809
9JPO|1|a|A|1810
9JPO|1|a|G|1811

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28