HL_9JPO_086

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPO_086 not in the Motif Atlas

Geometric match to HL_8B0X_084

Geometric discrepancy: 0.0758

The information below is about HL_8B0X_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9JPO|1|a|U|2356
9JPO|1|a|G|2357
9JPO|1|a|A|2358
9JPO|1|a|C|2359
9JPO|1|a|G|2360
9JPO|1|a|G|2361

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15

Chain v

50S ribosomal protein L27