HL_9JPP_006

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPP_006 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1329

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9JPP|1|A|A|320
9JPP|1|A|A|321
9JPP|1|A|C|322
9JPP|1|A|U|323
9JPP|1|A|G|324
9JPP|1|A|A|325
9JPP|1|A|G|326
9JPP|1|A|A|327
9JPP|1|A|C|328
9JPP|1|A|A|329
9JPP|1|A|C|330
9JPP|1|A|G|331
9JPP|1|A|G|332
9JPP|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20