HL_9JPP_046

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9JPP|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPP_046 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3287

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9JPP|1|a|A|382
9JPP|1|a|C|383
9JPP|1|a|A|384
9JPP|1|a|C|385
9JPP|1|a|G|386
9JPP|1|a|U|387
9JPP|1|a|G|388
9JPP|1|a|G|389
9JPP|1|a|U|390
9JPP|1|a|A|391
9JPP|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28