HL_9JPP_069

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9JPP|1|a|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPP_069 not in the Motif Atlas

Geometric match to HL_6KYV_004

Geometric discrepancy: 0.2141

The information below is about HL_6KYV_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9JPP|1|a|C|1533
9JPP|1|a|U|1534
9JPP|1|a|A|1535
9JPP|1|a|C|1536
9JPP|1|a|G|1537
9JPP|1|a|G|1538

Current chains

Chain a

23S rRNA

Nearby chains