HL_9JPP_085

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JPP_085 not in the Motif Atlas

Geometric match to HL_8B0X_101

Geometric discrepancy: 0.0756

The information below is about HL_8B0X_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9JPP|1|a|G|2304
9JPP|1|a|U|2305
9JPP|1|a|C|2306
9JPP|1|a|G|2307
9JPP|1|a|G|2308
9JPP|1|a|A|2309
9JPP|1|a|C|2310
9JPP|1|a|A|2311
9JPP|1|a|U|2312

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5