HL_9JQ2_006

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JQ2_006 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1269

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9JQ2|1|A|A|320
9JQ2|1|A|A|321
9JQ2|1|A|C|322
9JQ2|1|A|U|323
9JQ2|1|A|G|324
9JQ2|1|A|A|325
9JQ2|1|A|G|326
9JQ2|1|A|A|327
9JQ2|1|A|C|328
9JQ2|1|A|A|329
9JQ2|1|A|C|330
9JQ2|1|A|G|331
9JQ2|1|A|G|332
9JQ2|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20