HL_9JQ2_010

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9JQ2|1|A|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JQ2_010 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.2822

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9JQ2|1|A|G|462
9JQ2|1|A|U|463
9JQ2|1|A|U|464
9JQ2|1|A|A|465
9JQ2|1|A|A|466
9JQ2|1|A|U|467
9JQ2|1|A|A|468
9JQ2|1|A|C|469
9JQ2|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains