HL_9JSR_025

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JSR_025 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.224

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9JSR|1|A|U|1222
9JSR|1|A|G|1223
9JSR|1|A|U|1224
9JSR|1|A|G|1225
9JSR|1|A|A|1226
9JSR|1|A|G|1227

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21