HL_9JSR_028

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9JSR|1|A|U|1396, 9JSR|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JSR_028 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3755

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9JSR|1|A|G|1389
9JSR|1|A|U|1390
9JSR|1|A|U|1391
9JSR|1|A|A|1392
9JSR|1|A|A|1393
9JSR|1|A|U|1394
9JSR|1|A|A|1395
9JSR|1|A|U|1396
9JSR|1|A|U|1397
9JSR|1|A|C|1398

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23