HL_9K0Z_003

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_003 not in the Motif Atlas

Geometric match to HL_9MTS_103

Geometric discrepancy: 0.1002

The information below is about HL_9MTS_103

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9K0Z|1|2|G|53
9K0Z|1|2|U|54
9K0Z|1|2|U|55
9K0Z|1|2|C|56
9K0Z|1|2|G|57
9K0Z|1|2|A|58
9K0Z|1|2|U|59
9K0Z|1|2|U|60
9K0Z|1|2|C|61

Current chains

Chain 2

P/P-site Phe-tRNA(Phe)

Nearby chains

Chain h

Large subunit ribosomal RNA; LSU rRNA

Chain l

Large ribosomal subunit protein uL5

Chain t

Large ribosomal subunit protein uL16