HL_9K0Z_031
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9K0Z_031 not in the Motif Atlas
- Geometric match to HL_4LFB_029
- Geometric discrepancy: 0.1034
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9K0Z|1|A|C|1296
9K0Z|1|A|U|1297
9K0Z|1|A|G|1298
9K0Z|1|A|C|1299
9K0Z|1|A|A|1300
9K0Z|1|A|A|1301
9K0Z|1|A|C|1302
9K0Z|1|A|U|1303
9K0Z|1|A|C|1304
9K0Z|1|A|G|1305
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14B
- Chain S
- Small ribosomal subunit protein uS19
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