HL_9K0Z_034

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_034 not in the Motif Atlas

Geometric match to HL_4LFB_032

Geometric discrepancy: 0.0887

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9K0Z|1|A|C|1499
9K0Z|1|A|G|1500
9K0Z|1|A|G|1501
9K0Z|1|A|A|1502
9K0Z|1|A|A|1503
9K0Z|1|A|G|1504

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain h

Large subunit ribosomal RNA; LSU rRNA