HL_9K0Z_043

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9K0Z|1|h|A|195, 9K0Z|1|h|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_043 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0978

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9K0Z|1|h|G|193
9K0Z|1|h|A|194
9K0Z|1|h|A|195
9K0Z|1|h|A|196
9K0Z|1|h|C|197
9K0Z|1|h|A|198
9K0Z|1|h|U|199
9K0Z|1|h|C|200

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain Y

Large ribosomal subunit protein bL28

Chain s

Large ribosomal subunit protein uL15