HL_9K0Z_045

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_045 not in the Motif Atlas

Geometric match to HL_4WF9_008

Geometric discrepancy: 0.1294

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9K0Z|1|h|U|246
9K0Z|1|h|G|247
9K0Z|1|h|G|248
9K0Z|1|h|C|249
9K0Z|1|h|G|250
9K0Z|1|h|A|251
9K0Z|1|h|G|252

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein bL35

Chain s

Large ribosomal subunit protein uL15