HL_9K0Z_052

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

9K0Z|1|h|G|499

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_052 not in the Motif Atlas

Geometric match to HL_5J7L_146

Geometric discrepancy: 0.1008

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9K0Z|1|h|G|498
9K0Z|1|h|G|499
9K0Z|1|h|A|500
9K0Z|1|h|C|501
9K0Z|1|h|C|502
9K0Z|1|h|A|503
9K0Z|1|h|C|504
9K0Z|1|h|C|505

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain s

Large ribosomal subunit protein uL15